Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs55991907 | chr3:100915443 | A/C | 2.3E-7 | 406 | 15.67 | 14.98 | 10.07 | KM Plot |
| LGG | rs56027950 | chr3:100915910 | G/C | 2.3E-7 | 406 | 15.67 | 14.98 | 10.07 | KM Plot |
| LGG | rs56039920 | chr12:102296821 | C/T | 5.34E-6 | 403 | 14.43 | 18 | 21.25 | KM Plot |
| LGG | rs56044978 | chr6:36083104 | A/T | 1.05E-14 | 406 | 15.47 | 15.2 | 5.3 | KM Plot |
| LGG | rs56056710 | chr6:36036352 | G/T | 1.03E-9 | 405 | 15.57 | 15.18 | 6.15 | KM Plot |
| LGG | rs56059109 | chr6:36025307 | C/T | 1.0E-9 | 406 | 15.67 | 14.95 | 6.15 | KM Plot |
| LGG | rs56113358 | chr7:16517477 | T/A | 2.11E-5 | 398 | 15.13 | 16.37 | 9.3 | KM Plot |
| LGG | rs56133220 | chr6:36032668 | G/A | 1.0E-9 | 406 | 15.67 | 14.95 | 6.15 | KM Plot |
| LGG | rs56147268 | chr8:1723896 | T/C | 1.38E-6 | 400 | 15.35 | 14.42 | 5.42 | KM Plot |
| LGG | rs56154114 | chr4:84438571 | A/G | 8.88E-16 | 399 | 14.92 | 18.13 | 5.17 | KM Plot |
| LGG | rs56156688 | chr6:35995633 | A/G | 9.5E-10 | 407 | 15.6 | 15.17 | 6.15 | KM Plot |
| LGG | rs56178200 | chr10:43309435 | C/T | 0.000173 | 401 | 15.97 | 11.07 | 17.62 | KM Plot |
| LGG | rs56197705 | chr4:84427435 | A/G | 1.11E-15 | 397 | 14.85 | 18.13 | 5.17 | KM Plot |
| LGG | rs56208924 | chr8:144260189 | C/T | 0.000103 | 389 | 16.73 | 14.75 | 15.35 | KM Plot |
| LGG | rs56214235 | chr4:84446635 | G/C | 7.77E-16 | 400 | 14.9 | 18.23 | 5.17 | KM Plot |